IL_5JVH_045

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5JVH|1|X|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_045 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.0962

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

5JVH|1|X|G|1332
5JVH|1|X|G|1333
5JVH|1|X|A|1334
5JVH|1|X|A|1335
5JVH|1|X|G|1336
*
5JVH|1|X|C|1344
5JVH|1|X|G|1345
5JVH|1|X|C|1346

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L23