IL_5JVH_060

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5JVH|1|X|C|1792, 5JVH|1|X|C|1808, 5JVH|1|X|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_060 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0689

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5JVH|1|X|U|1789
5JVH|1|X|G|1790
5JVH|1|X|C|1791
5JVH|1|X|C|1792
5JVH|1|X|A|1793
5JVH|1|X|A|1794
5JVH|1|X|C|1795
*
5JVH|1|X|G|1805
5JVH|1|X|G|1806
5JVH|1|X|A|1807
5JVH|1|X|C|1808
5JVH|1|X|G|1809
5JVH|1|X|U|1810
5JVH|1|X|A|1811
5JVH|1|X|U|1812
5JVH|1|X|A|1813

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2