IL_5JVH_065

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_065 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.1137

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

5JVH|1|X|G|1916
5JVH|1|X|C|1917
*
5JVH|1|X|G|1947
5JVH|1|X|C|1948
5JVH|1|X|A|1949
5JVH|1|X|C|1950

Current chains

Chain X

23S ribosomal RNA

Nearby chains