IL_5JVH_066

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5JVH|1|X|A|1921, 5JVH|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_066 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1204

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5JVH|1|X|C|1917
5JVH|1|X|G|1918
5JVH|1|X|A|1919
5JVH|1|X|A|1920
5JVH|1|X|A|1921
5JVH|1|X|U|1922
5JVH|1|X|U|1923
5JVH|1|X|C|1924
5JVH|1|X|C|1925
5JVH|1|X|U|1926
5JVH|1|X|U|1927
5JVH|1|X|G|1928
*
5JVH|1|X|C|1944
5JVH|1|X|C|1945
5JVH|1|X|U|1946
5JVH|1|X|G|1947

Current chains

Chain X

23S ribosomal RNA

Nearby chains