IL_5JVH_068

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5JVH|1|X|C|2038, 5JVH|1|X|C|2591, 5JVH|1|X|U|2592, 5JVH|1|X|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_068 not in the Motif Atlas

Homologous match to IL_7A0S_074

Geometric discrepancy: 0.0984

The information below is about IL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5JVH|1|X|A|2037
5JVH|1|X|C|2038
5JVH|1|X|G|2039
5JVH|1|X|A|2040
*
5JVH|1|X|U|2590
5JVH|1|X|C|2591
5JVH|1|X|U|2592
5JVH|1|X|A|2593
5JVH|1|X|U|2594

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32