IL_5JVH_083

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5JVH|1|X|A|2551, 5JVH|1|X|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_083 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.1434

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

5JVH|1|X|C|2491
5JVH|1|X|G|2492
*
5JVH|1|X|C|2550
5JVH|1|X|A|2551
5JVH|1|X|C|2552
5JVH|1|X|G|2553

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13