IL_5JVH_094

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_094 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.0734

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

5JVH|1|X|U|2822
5JVH|1|X|G|2823
5JVH|1|X|C|2824
5JVH|1|X|A|2825
5JVH|1|X|C|2826
5JVH|1|X|G|2827
*
5JVH|1|X|U|2840
5JVH|1|X|U|2841
5JVH|1|X|C|2842
5JVH|1|X|A|2843
5JVH|1|X|G|2844

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19