IL_5JVH_097
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CCCC*GGGUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_097 not in the Motif Atlas
- Homologous match to IL_7A0S_104
- Geometric discrepancy: 0.2076
- The information below is about IL_7A0S_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05192.8
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5JVH|1|Y|C|32
5JVH|1|Y|C|33
5JVH|1|Y|C|34
5JVH|1|Y|C|35
*
5JVH|1|Y|G|51
5JVH|1|Y|G|52
5JVH|1|Y|G|53
5JVH|1|Y|U|54
5JVH|1|Y|C|55
5JVH|1|Y|G|56
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
Coloring options: