IL_5JVH_110
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CACUG*CAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 5JVH|1|Y|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_110 not in the Motif Atlas
- Homologous match to IL_7A0S_110
- Geometric discrepancy: 0.2094
- The information below is about IL_7A0S_110
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JVH|1|Y|C|19
5JVH|1|Y|A|20
5JVH|1|Y|C|21
5JVH|1|Y|U|22
5JVH|1|Y|G|23
*
5JVH|1|Y|C|64
5JVH|1|Y|A|65
5JVH|1|Y|G|66
5JVH|1|Y|C|67
5JVH|1|Y|A|68
5JVH|1|Y|G|69
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: