Loop IL_5KCS

3D structure

PDB id: 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC
Length: 40 nucleotides
Bulged bases: 5KCS|1|1A|U|1061, 5KCS|1|1A|U|1066, 5KCS|1|1A|A|1070
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5KCS|1|1A|G|1055
5KCS|1|1A|G|1056
5KCS|1|1A|A|1057
5KCS|1|1A|U|1058
5KCS|1|1A|G|1059
5KCS|1|1A|U|1060
5KCS|1|1A|U|1061
5KCS|1|1A|G|1062
5KCS|1|1A|G|1063
5KCS|1|1A|C|1064
5KCS|1|1A|U|1065
5KCS|1|1A|U|1066
5KCS|1|1A|A|1067
5KCS|1|1A|G|1068
5KCS|1|1A|A|1069
5KCS|1|1A|A|1070
5KCS|1|1A|G|1071
5KCS|1|1A|C|1072
5KCS|1|1A|A|1073
5KCS|1|1A|G|1074
5KCS|1|1A|C|1075
5KCS|1|1A|C|1076
5KCS|1|1A|A|1077
5KCS|1|1A|U|1078
5KCS|1|1A|C|1079
5KCS|1|1A|A|1080
5KCS|1|1A|U|1081
5KCS|1|1A|U|1082
5KCS|1|1A|U|1083
5KCS|1|1A|A|1084
5KCS|1|1A|A|1085
5KCS|1|1A|A|1086
5KCS|1|1A|G|1087
5KCS|1|1A|A|1088
5KCS|1|1A|A|1089
5KCS|1|1A|A|1090
*
5KCS|1|1A|U|1101
5KCS|1|1A|C|1102
5KCS|1|1A|A|1103
5KCS|1|1A|C|1104

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 19: 50S ribosomal protein L36
Chain 1J: 50S ribosomal protein L10
Chain 1K: 50S ribosomal protein L11
Chain 1Q: 50S ribosomal protein L16
Chain 1w: Tetracycline resistance protein TetM from transposon Tn916

IL_5KCS_039