IL_5KCS_053

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_053 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3606

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5KCS|1|1A|U|1474
5KCS|1|1A|G|1475
5KCS|1|1A|U|1476
5KCS|1|1A|A|1477
5KCS|1|1A|G|1478
5KCS|1|1A|G|1479
*
5KCS|1|1A|C|1512
5KCS|1|1A|U|1513
5KCS|1|1A|G|1514
5KCS|1|1A|A|1515
5KCS|1|1A|G|1516
5KCS|1|1A|G|1517

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains