IL_5KCS_062

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5KCS|1|1A|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_062 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1454

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KCS|1|1A|U|1712
5KCS|1|1A|A|1713
5KCS|1|1A|U|1714
5KCS|1|1A|G|1715
5KCS|1|1A|U|1716
5KCS|1|1A|A|1717
5KCS|1|1A|G|1718
*
5KCS|1|1A|U|1742
5KCS|1|1A|G|1743
5KCS|1|1A|A|1744
5KCS|1|1A|A|1745
5KCS|1|1A|A|1746

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains