IL_5KCS_091

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_091 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3655

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5KCS|1|1A|G|2588
5KCS|1|1A|A|2589
5KCS|1|1A|A|2590
5KCS|1|1A|C|2591
*
5KCS|1|1A|G|2603
5KCS|1|1A|PSU|2604
5KCS|1|1A|PSU|2605
5KCS|1|1A|C|2606

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1x

Transfer RNA; tRNA