IL_5KCS_102

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_102 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1612

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

5KCS|1|1A|U|2847
5KCS|1|1A|G|2848
5KCS|1|1A|U|2849
5KCS|1|1A|A|2850
5KCS|1|1A|A|2851
5KCS|1|1A|G|2852
*
5KCS|1|1A|U|2865
5KCS|1|1A|U|2866
5KCS|1|1A|G|2867
5KCS|1|1A|A|2868
5KCS|1|1A|G|2869

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19