IL_5KCS_109
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUAAC*GGG
- Length
- 9 nucleotides
- Bulged bases
- 5KCS|1|1a|C|48, 5KCS|1|1a|A|51
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_109 not in the Motif Atlas
- Homologous match to IL_5J7L_003
- Geometric discrepancy: 0.1722
- The information below is about IL_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14177.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5KCS|1|1a|C|47
5KCS|1|1a|C|48
5KCS|1|1a|U|49
5KCS|1|1a|A|50
5KCS|1|1a|A|51
5KCS|1|1a|C|52
*
5KCS|1|1a|G|359
5KCS|1|1a|G|360
5KCS|1|1a|G|361
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1w
- Tetracycline resistance protein TetM from transposon Tn916
Coloring options: