IL_5KCS_126

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_126 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1704

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5KCS|1|1a|U|409
5KCS|1|1a|G|410
5KCS|1|1a|A|411
5KCS|1|1a|A|412
5KCS|1|1a|G|413
5KCS|1|1a|A|414
5KCS|1|1a|A|415
5KCS|1|1a|G|416
*
5KCS|1|1a|U|427
5KCS|1|1a|G|428
5KCS|1|1a|U|429
5KCS|1|1a|A|430
5KCS|1|1a|A|431
5KCS|1|1a|A|432
5KCS|1|1a|G|433

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4