IL_5KCS_131
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5KCS|1|1a|G|517, 5KCS|1|1a|U|531, 5KCS|1|1a|A|532, 5KCS|1|1a|U|534
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_131 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.512
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5KCS|1|1a|G|515
5KCS|1|1a|PSU|516
5KCS|1|1a|G|517
5KCS|1|1a|C|518
5KCS|1|1a|C|519
5KCS|1|1a|A|520
5KCS|1|1a|G|521
*
5KCS|1|1a|C|528
5KCS|1|1a|G|529
5KCS|1|1a|G|530
5KCS|1|1a|U|531
5KCS|1|1a|A|532
5KCS|1|1a|A|533
5KCS|1|1a|U|534
5KCS|1|1a|A|535
5KCS|1|1a|C|536
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1l
- 30S ribosomal protein S12
- Chain 1v
- mRNA
- Chain 1w
- Tetracycline resistance protein TetM from transposon Tn916
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