IL_5KCS_150

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

5KCS|1|1a|U|1025, 5KCS|1|1a|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1a|G|1003
5KCS|1|1a|A|1004
5KCS|1|1a|A|1005
5KCS|1|1a|G|1006
*
5KCS|1|1a|U|1023
5KCS|1|1a|G|1024
5KCS|1|1a|U|1025
5KCS|1|1a|G|1026
5KCS|1|1a|C|1027
5KCS|1|1a|C|1028
5KCS|1|1a|U|1029
5KCS|1|1a|U|1030
5KCS|1|1a|C|1031
5KCS|1|1a|G|1032
5KCS|1|1a|G|1033
5KCS|1|1a|G|1034
5KCS|1|1a|A|1035
5KCS|1|1a|A|1036
5KCS|1|1a|C|1037

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14