IL_5KCS_156

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUGC*GAACUCA

Length

13 nucleotides

Bulged bases

5KCS|1|1a|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1a|U|1123
5KCS|1|1a|G|1124
5KCS|1|1a|U|1125
5KCS|1|1a|U|1126
5KCS|1|1a|G|1127
5KCS|1|1a|C|1128
*
5KCS|1|1a|G|1144
5KCS|1|1a|A|1145
5KCS|1|1a|A|1146
5KCS|1|1a|C|1147
5KCS|1|1a|U|1148
5KCS|1|1a|C|1149
5KCS|1|1a|A|1150

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10