IL_5KCS_162

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUUG*CAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1a|C|1303
5KCS|1|1a|G|1304
5KCS|1|1a|G|1305
5KCS|1|1a|A|1306
5KCS|1|1a|U|1307
5KCS|1|1a|U|1308
5KCS|1|1a|G|1309
*
5KCS|1|1a|C|1328
5KCS|1|1a|A|1329
5KCS|1|1a|U|1330
5KCS|1|1a|G|1331
5KCS|1|1a|A|1332
5KCS|1|1a|A|1333
5KCS|1|1a|G|1334

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1s

30S ribosomal protein S19