IL_5KCS_178
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 5KCS|1|1A|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_178 not in the Motif Atlas
- Homologous match to IL_4WF9_117
- Geometric discrepancy: 0.1348
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
5KCS|1|1A|G|1666
5KCS|1|1A|G|1667
5KCS|1|1A|A|1668
5KCS|1|1A|A|1669
5KCS|1|1A|C|1670
5KCS|1|1A|U|1671
5KCS|1|1A|A|1672
5KCS|1|1A|G|1673
5KCS|1|1A|G|1674
*
5KCS|1|1A|C|1990
5KCS|1|1A|U|1991
5KCS|1|1A|G|1992
5KCS|1|1A|U|1993
5KCS|1|1A|C|1994
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
Coloring options: