IL_5KCS_182

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCACCCUUUA

Length

62 nucleotides

Bulged bases

5KCS|1|1A|U|2111, 5KCS|1|1A|U|2118, 5KCS|1|1A|U|2132, 5KCS|1|1A|A|2171, 5KCS|1|1A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1A|U|2106
5KCS|1|1A|G|2107
5KCS|1|1A|A|2108
5KCS|1|1A|U|2109
5KCS|1|1A|G|2110
5KCS|1|1A|U|2111
5KCS|1|1A|G|2112
5KCS|1|1A|U|2113
5KCS|1|1A|A|2114
5KCS|1|1A|G|2115
5KCS|1|1A|G|2116
5KCS|1|1A|A|2117
5KCS|1|1A|U|2118
5KCS|1|1A|A|2119
5KCS|1|1A|G|2120
5KCS|1|1A|G|2121
5KCS|1|1A|U|2122
5KCS|1|1A|G|2123
5KCS|1|1A|G|2124
5KCS|1|1A|G|2125
5KCS|1|1A|A|2126
5KCS|1|1A|G|2127
5KCS|1|1A|G|2128
5KCS|1|1A|C|2129
5KCS|1|1A|U|2130
5KCS|1|1A|U|2131
5KCS|1|1A|U|2132
5KCS|1|1A|G|2133
5KCS|1|1A|A|2134
5KCS|1|1A|A|2135
5KCS|1|1A|G|2136
5KCS|1|1A|U|2137
*
5KCS|1|1A|A|2154
5KCS|1|1A|U|2155
5KCS|1|1A|G|2156
5KCS|1|1A|G|2157
5KCS|1|1A|A|2158
5KCS|1|1A|G|2159
5KCS|1|1A|C|2160
5KCS|1|1A|C|2161
5KCS|1|1A|G|2162
5KCS|1|1A|A|2163
5KCS|1|1A|C|2164
5KCS|1|1A|C|2165
5KCS|1|1A|U|2166
5KCS|1|1A|U|2167
5KCS|1|1A|G|2168
5KCS|1|1A|A|2169
5KCS|1|1A|A|2170
5KCS|1|1A|A|2171
5KCS|1|1A|U|2172
5KCS|1|1A|A|2173
5KCS|1|1A|C|2174
5KCS|1|1A|C|2175
5KCS|1|1A|A|2176
5KCS|1|1A|C|2177
5KCS|1|1A|C|2178
5KCS|1|1A|C|2179
5KCS|1|1A|U|2180
5KCS|1|1A|U|2181
5KCS|1|1A|U|2182
5KCS|1|1A|A|2183

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains