IL_5KCS_186
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUGA*UAAUC
- Length
- 11 nucleotides
- Bulged bases
- 5KCS|1|1a|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_186 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3584
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
5KCS|1|1a|G|27
5KCS|1|1a|A|28
5KCS|1|1a|U|29
5KCS|1|1a|U|30
5KCS|1|1a|G|31
5KCS|1|1a|A|32
*
5KCS|1|1a|U|552
5KCS|1|1a|A|553
5KCS|1|1a|A|554
5KCS|1|1a|U|555
5KCS|1|1a|C|556
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
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