IL_5KCS_190

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUAAC*GCUAAUACC

Length

17 nucleotides

Bulged bases

5KCS|1|1a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1a|G|146
5KCS|1|1a|G|147
5KCS|1|1a|G|148
5KCS|1|1a|A|149
5KCS|1|1a|U|150
5KCS|1|1a|A|151
5KCS|1|1a|A|152
5KCS|1|1a|C|153
*
5KCS|1|1a|G|168
5KCS|1|1a|C|169
5KCS|1|1a|U|170
5KCS|1|1a|A|171
5KCS|1|1a|A|172
5KCS|1|1a|U|173
5KCS|1|1a|A|174
5KCS|1|1a|C|175
5KCS|1|1a|C|176

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20