IL_5KPV_016

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1332

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5KPV|1|26|G|292
5KPV|1|26|G|293
*
5KPV|1|26|U|304
5KPV|1|26|G|305
5KPV|1|26|A|306
5KPV|1|26|C|307
5KPV|1|26|C|308

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16