IL_5KPV_022

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5KPV|1|26|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1749

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPV|1|26|G|446
5KPV|1|26|G|447
5KPV|1|26|A|448
5KPV|1|26|G|449
5KPV|1|26|G|450
*
5KPV|1|26|C|483
5KPV|1|26|G|484
5KPV|1|26|U|485
5KPV|1|26|U|486
5KPV|1|26|A|487
5KPV|1|26|C|488

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16

Chain 8

30S ribosomal protein S4