IL_5KPV_060

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5KPV|1|26|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_060 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.5449

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5KPV|1|26|C|1407
5KPV|1|26|A|1408
5KPV|1|26|C|1409
*
5KPV|1|26|G|1491
5KPV|1|26|A|1492
5KPV|1|26|A|1493
5KPV|1|26|G|1494

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 27

Large subunit ribosomal RNA; LSU rRNA

Chain 29

mRNA

Chain 30

Transfer RNA; tRNA