IL_5KPV_071

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_071 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1037

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5KPV|1|27|G|188
5KPV|1|27|G|189
5KPV|1|27|A|190
5KPV|1|27|A|191
5KPV|1|27|C|192
5KPV|1|27|U|193
5KPV|1|27|G|194
*
5KPV|1|27|C|201
5KPV|1|27|U|202
5KPV|1|27|A|203
5KPV|1|27|A|204
5KPV|1|27|G|205
5KPV|1|27|U|206
5KPV|1|27|A|207
5KPV|1|27|C|208

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28