IL_5KPV_074

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_074 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3424

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5KPV|1|27|C|274
5KPV|1|27|C|275
5KPV|1|27|U|276
5KPV|1|27|G|277
5KPV|1|27|A|278
5KPV|1|27|A|279
5KPV|1|27|U|280
5KPV|1|27|C|281
*
5KPV|1|27|G|359
5KPV|1|27|U|360
5KPV|1|27|G|361
5KPV|1|27|A|362
5KPV|1|27|G|363

Current chains

Chain 27

23S ribosomal RNA

Nearby chains