IL_5KPV_153

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_153 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5KPV|1|27|C|2350
5KPV|1|27|G|2351
5KPV|1|27|A|2352
5KPV|1|27|G|2353
*
5KPV|1|27|C|2364
5KPV|1|27|G|2365
5KPV|1|27|A|2366
5KPV|1|27|G|2367

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L35

Chain N

50S ribosomal protein L18

Chain V

50S ribosomal protein L27