IL_5KPW_020

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1362

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5KPW|1|26|U|409
5KPW|1|26|G|410
5KPW|1|26|A|411
5KPW|1|26|A|412
5KPW|1|26|G|413
5KPW|1|26|A|414
5KPW|1|26|A|415
5KPW|1|26|G|416
*
5KPW|1|26|U|427
5KPW|1|26|G|428
5KPW|1|26|U|429
5KPW|1|26|A|430
5KPW|1|26|A|431
5KPW|1|26|A|432
5KPW|1|26|G|433

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 8

30S ribosomal protein S4