IL_5KPW_061
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KPW_061 not in the Motif Atlas
- Geometric match to IL_2O3X_003
- Geometric discrepancy: 0.2726
- The information below is about IL_2O3X_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
5KPW|1|26|C|1407
5KPW|1|26|A|1408
5KPW|1|26|C|1409
*
5KPW|1|26|G|1491
5KPW|1|26|A|1492
5KPW|1|26|A|1493
5KPW|1|26|G|1494
Current chains
- Chain 26
- 16S ribosomal RNA
Nearby chains
- Chain 16
- 30S ribosomal protein S12
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain 29
- mRNA
- Chain 30
- Transfer RNA; tRNA
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