IL_5KPW_096

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_096 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2404

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5KPW|1|27|G|875
5KPW|1|27|C|876
5KPW|1|27|A|877
5KPW|1|27|A|878
5KPW|1|27|G|879
*
5KPW|1|27|C|898
5KPW|1|27|A|899
5KPW|1|27|A|900
5KPW|1|27|C|901
5KPW|1|27|C|902

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 33

GTP pyrophosphokinase

Chain L

50S ribosomal protein L16