IL_5KPW_108

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

5KPW|1|27|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_108 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.2327

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5KPW|1|27|G|1087
5KPW|1|27|A|1088
5KPW|1|27|A|1089
5KPW|1|27|A|1090
*
5KPW|1|27|U|1101
5KPW|1|27|C|1102

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain H

50S ribosomal protein L11