IL_5KPW_116

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_116 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1283

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5KPW|1|27|C|1357
5KPW|1|27|G|1358
5KPW|1|27|A|1359
5KPW|1|27|G|1360
5KPW|1|27|G|1361
*
5KPW|1|27|C|1370
5KPW|1|27|G|1371
5KPW|1|27|U|1372
5KPW|1|27|A|1373
5KPW|1|27|G|1374

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain W

50S ribosomal protein L28