IL_5KPW_123

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_123 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3857

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5KPW|1|27|G|1473
5KPW|1|27|U|1474
5KPW|1|27|G|1475
5KPW|1|27|U|1476
5KPW|1|27|A|1477
5KPW|1|27|G|1478
*
5KPW|1|27|U|1513
5KPW|1|27|G|1514
5KPW|1|27|A|1515
5KPW|1|27|G|1516
5KPW|1|27|G|1517
5KPW|1|27|C|1518

Current chains

Chain 27

23S ribosomal RNA

Nearby chains