IL_5KPW_131

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5KPW|1|27|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_131 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0938

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5KPW|1|27|C|1686
5KPW|1|27|G|1687
5KPW|1|27|U|1688
5KPW|1|27|A|1689
5KPW|1|27|A|1690
5KPW|1|27|C|1691
*
5KPW|1|27|G|1696
5KPW|1|27|G|1697
5KPW|1|27|A|1698
5KPW|1|27|G|1699
5KPW|1|27|A|1700
5KPW|1|27|A|1701
5KPW|1|27|G|1702

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2