IL_5KPW_132

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5KPW|1|27|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_132 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.152

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPW|1|27|U|1712
5KPW|1|27|A|1713
5KPW|1|27|U|1714
5KPW|1|27|G|1715
5KPW|1|27|U|1716
5KPW|1|27|A|1717
5KPW|1|27|G|1718
*
5KPW|1|27|U|1742
5KPW|1|27|G|1743
5KPW|1|27|A|1744
5KPW|1|27|A|1745
5KPW|1|27|A|1746

Current chains

Chain 27

23S ribosomal RNA

Nearby chains