IL_5KPW_157

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_157 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1682

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5KPW|1|27|C|2466
5KPW|1|27|C|2467
5KPW|1|27|A|2468
5KPW|1|27|A|2469
5KPW|1|27|G|2470
*
5KPW|1|27|C|2480
5KPW|1|27|G|2481
5KPW|1|27|A|2482
5KPW|1|27|C|2483
5KPW|1|27|G|2484

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 33

GTP pyrophosphokinase

Chain 5

50S ribosomal protein L36

Chain L

50S ribosomal protein L16