IL_5KPW_178

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

5KPW|1|26|C|1027, 5KPW|1|26|U|1030, 5KPW|1|26|C|1031, 5KPW|1|26|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPW|1|26|G|1003
5KPW|1|26|A|1004
5KPW|1|26|A|1005
5KPW|1|26|G|1006
*
5KPW|1|26|U|1023
5KPW|1|26|G|1024
5KPW|1|26|U|1025
5KPW|1|26|G|1026
5KPW|1|26|C|1027
5KPW|1|26|C|1028
5KPW|1|26|U|1029
5KPW|1|26|U|1030
5KPW|1|26|C|1031
5KPW|1|26|G|1032
5KPW|1|26|G|1033
5KPW|1|26|G|1034
5KPW|1|26|A|1035
5KPW|1|26|A|1036
5KPW|1|26|C|1037

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 18

30S ribosomal protein S14