IL_5KPW_183

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_183 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0799

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5KPW|1|27|G|1666
5KPW|1|27|G|1667
5KPW|1|27|A|1668
5KPW|1|27|A|1669
5KPW|1|27|C|1670
5KPW|1|27|U|1671
5KPW|1|27|A|1672
5KPW|1|27|G|1673
5KPW|1|27|G|1674
*
5KPW|1|27|C|1990
5KPW|1|27|U|1991
5KPW|1|27|G|1992
5KPW|1|27|U|1993
5KPW|1|27|C|1994

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L14