IL_5KPX_020

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1661

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5KPX|1|26|U|409
5KPX|1|26|G|410
5KPX|1|26|A|411
5KPX|1|26|A|412
5KPX|1|26|G|413
5KPX|1|26|A|414
5KPX|1|26|A|415
5KPX|1|26|G|416
*
5KPX|1|26|U|427
5KPX|1|26|G|428
5KPX|1|26|U|429
5KPX|1|26|A|430
5KPX|1|26|A|431
5KPX|1|26|A|432
5KPX|1|26|G|433

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 8

30S ribosomal protein S4