IL_5KPX_072

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_072 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1013

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5KPX|1|27|G|188
5KPX|1|27|G|189
5KPX|1|27|A|190
5KPX|1|27|A|191
5KPX|1|27|C|192
5KPX|1|27|U|193
5KPX|1|27|G|194
*
5KPX|1|27|C|201
5KPX|1|27|U|202
5KPX|1|27|A|203
5KPX|1|27|A|204
5KPX|1|27|G|205
5KPX|1|27|U|206
5KPX|1|27|A|207
5KPX|1|27|C|208

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28