IL_5KPX_075

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2716

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5KPX|1|27|C|274
5KPX|1|27|C|275
5KPX|1|27|U|276
5KPX|1|27|G|277
5KPX|1|27|A|278
5KPX|1|27|A|279
5KPX|1|27|U|280
5KPX|1|27|C|281
*
5KPX|1|27|G|359
5KPX|1|27|U|360
5KPX|1|27|G|361
5KPX|1|27|A|362
5KPX|1|27|G|363

Current chains

Chain 27

23S ribosomal RNA

Nearby chains