IL_5KPX_077

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5KPX|1|27|A|504, 5KPX|1|27|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_077 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5KPX|1|27|G|481
5KPX|1|27|A|482
5KPX|1|27|A|483
5KPX|1|27|C|484
*
5KPX|1|27|G|496
5KPX|1|27|A|497
5KPX|1|27|G|498
5KPX|1|27|U|499
5KPX|1|27|G|500
5KPX|1|27|A|501
5KPX|1|27|A|502
5KPX|1|27|A|503
5KPX|1|27|A|504
5KPX|1|27|A|505
5KPX|1|27|G|506
5KPX|1|27|A|507
5KPX|1|27|A|508
5KPX|1|27|C|509

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24