IL_5KPX_095

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_095 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1908

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5KPX|1|27|G|875
5KPX|1|27|C|876
5KPX|1|27|A|877
5KPX|1|27|A|878
5KPX|1|27|G|879
*
5KPX|1|27|C|898
5KPX|1|27|A|899
5KPX|1|27|A|900
5KPX|1|27|C|901
5KPX|1|27|C|902

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 33

GTP pyrophosphokinase

Chain L

50S ribosomal protein L16