IL_5KPX_101

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_101 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1671

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5KPX|1|27|U|1018
5KPX|1|27|U|1019
5KPX|1|27|A|1020
5KPX|1|27|A|1021
5KPX|1|27|G|1022
5KPX|1|27|U|1023
5KPX|1|27|G|1024
*
5KPX|1|27|C|1140
5KPX|1|27|U|1141
5KPX|1|27|A|1142
5KPX|1|27|A|1143
5KPX|1|27|A|1144

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain I

50S ribosomal protein L13