IL_5KPX_107

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

5KPX|1|27|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_107 not in the Motif Atlas

Geometric match to IL_5J7L_264

Geometric discrepancy: 0.3237

The information below is about IL_5J7L_264

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5KPX|1|27|G|1087
5KPX|1|27|A|1088
5KPX|1|27|A|1089
5KPX|1|27|A|1090
*
5KPX|1|27|U|1101
5KPX|1|27|C|1102

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain H

50S ribosomal protein L11