IL_5KPX_109

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

5KPX|1|27|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_109 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.115

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

5KPX|1|27|G|1202
5KPX|1|27|U|1203
5KPX|1|27|A|1204
5KPX|1|27|A|1205
5KPX|1|27|G|1206
*
5KPX|1|27|U|1240
5KPX|1|27|A|1241
5KPX|1|27|U|1242
5KPX|1|27|C|1243

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain K

50S ribosomal protein L15