IL_5KPX_129

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5KPX|1|27|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_129 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0876

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5KPX|1|27|C|1686
5KPX|1|27|G|1687
5KPX|1|27|U|1688
5KPX|1|27|A|1689
5KPX|1|27|A|1690
5KPX|1|27|C|1691
*
5KPX|1|27|G|1696
5KPX|1|27|G|1697
5KPX|1|27|A|1698
5KPX|1|27|G|1699
5KPX|1|27|A|1700
5KPX|1|27|A|1701
5KPX|1|27|G|1702

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2